Hydrophobic Assembly
Hydrophobic Assembly
Some of my earliest work in the Chandler group concerned the role of solvent fluctuations in the aggregation of two nanoscale hydrophobic solutes. At the interface of a nanoscale hydrophobic solute, water forms an interface which is akin to the interface found between its coexisting liquid and vapor phases. Fluctuations in this solute-solvent interface play an important role in the aggregation of such particles. In other words, the dimerization is poorly described in the absence of a solvent-based reaction coordinate.
We find that the precursor to the aggregation of two solute particles is the formation of a vapor tunnel that bridges the two solutes, which is typically followed by a rapid collapse of the solutes involved. This tunnel forms through the mutual fluctuation of the interface surrounding each particle. The free energy cost associated with the formation of a vapor tunnel grows rapidly with the distance between the particles. Thus typical reactive trajectories pass through a region of phase space for which the formation of the vapor tunnel is essentially activation-less. For further reading refer to the article below.
1. "The Role of Solvent Fluctuations in Hydrophobic Assembly," A.P. Willard and D. Chandler. J. Phys. Chem. B, 112, 6187-6192 (2008).

Snapshots of a reactive trajectory at several points in time. Each snapshot contains two hydrophobic solutes (green) in a coarse grained solvent model where the vapor-like regions are colored translucent white. Each snapshot is labeled on the trajectory plotted in the one dimensional phase space r12, the inter-particle separation (top left) and the two dimensional phase space of r12 and Nvap, the solvent density in the vicinity of the solutes (bottom left). The solid red lines are contours of the free energy surface.